Michael

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I've got fastq at 2.5gb for read 1 and the same for read 2 or the allValidPairs is at 5.8gb.

Hi @jianhong I am using chromosome 19 as a first pass, but ideally want the entire genome once its working. >seqlev

I too am seeing this error. The output files are empty, except for the 2D.fastq. So I don't think anything has happened with the data. Any help on this thread...