rna-tools
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mmagnus
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
Even after ``` (base) ➜ rasp-fd-1.0 git:(master) ✗ arch i386 (base) ➜ rasp-fd-1.0 git:(master) ✗ make cd src/pdb-library; make CFLAG= g++ -c pdb.cpp -o pdb.o g++ -c model.cpp -o model.o...
https://pypi.org/project/varnaapi/ https://htyao.gitlab.io/varna-api/
- [X] prototype the server - [X] domain rna-tools.online - [X] see it running for cheap/free somewhere else (aws? django?) - [X] drag and drop more files ! - [X]...
``` (base) ubuntu@ip-172-31-0-216:~/rna-tools/rna_tools/tools/clarna_app$ ./test.sh ../../input/pistol_thrs0.50A_clust99-000001_AA.pdb Traceback (most recent call last): File "./clarna_app.py", line 171, in mdb = get_dot_bracket_from_ClaRNAoutput(fn_out, args.verbose) # multie line dot bracket File "./clarna_app.py", line 63, in get_dot_bracket_from_ClaRNAoutput...
Hi, I'm working on an API where I need to get the sequence out of a .pdb file. The way the code base is set up now you need to...
# if something short sh = '' # aaa this will not work for pse files (!) #if len(open(file).readlines()) < args.detailed: # sh = ' show sticks; ' # lines;
selection = OrderedDict() for i in l: # ['A', '1-10', '15', '25-30', 'B', '1-10'] if i in string.ascii_letters: # or string.digits: if verbose: print('chain', i) chain_curr = i continue