batchtools
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mllg
Tools for computation on batch systems
Hi I'm interested in using batchtools but after looking at the documentation I'm not sure if batchtools has support for dependencies between jobs, which is a key feature that I...
Some `makeCluster*` operations have side effects, e.g., opening connections ``` > nrow(showConnections()) [1] 0 > cl = makeClusterFunctionsSocket(2) > nrow(showConnections()) [1] 2 ``` There is no way to 'undo' (e.g.,...
I got a confusing error message: ``` > getStatus() Status for 100 jobs at 2019-02-08 16:09:42: Submitted : 100 (100.0%) -- Queued : 0 ( 0.0%) -- Started : 100...
We frequently change clusters/partition on our HPC and setting the clusters in makeClusterFunctionSlurm() is not really practical (multiple users are linking to the same template/config file). So we handle the...
hi there I see in the templates that there is a log.file parameter, and I would like to specify that (so I can control where the log file exists on...
Frequently I run into the situation that I run set of jobs in parallel with `batchMap` only to realize that I forgot to include an interesting case in the input...
Following on my barrage of slurm-testing, it appears that batchtools reports SLURM jobs that result in a TIMEOUT as "Done" as opposed to "Error". Is there anything that can be...
Hi there -- this should be an easy fix -- it looks like when resources is set with max.concurrent.jobs=N, and the job is run as a SLURM array job, it...