Mike Lin

Hi, Can you check the status of the gsl OPAM package? Hoping to see something like this: ``` $ opam info gsl package: gsl version: 1.11.0 homepage: https://bitbucket.org/mmottl/gsl-ocaml authors: Olivier...

Sorry, I'm not exactly sure what the problem is then. What OS & version are you using? For reference I was able to run PhyloCSF using http://www.instantserver.io/ with this exact...

Hmm...I used the same script successfully on a fresh Ubuntu 12.04 instance I launched inside EC2. I can only speculate there might be something particular to your environment that is...

`brew install gsl` will install the [GNU Scientific Library](http://www.gnu.org/software/gsl/), while `opam install gsl` will install the [OCaml bindings](https://bitbucket.org/mmottl/gsl-ocaml) to that library. The library is needed for the bindings, and the...

Find the executable named `gsl-config` (most likely somewhere in your GSL installation directory) and include its directory in your PATH. `gsl-config` is a program included with GNU Scientific Library that...

@xdkong unfortunately I can't tell for sure what the problem is. Is the OCaml version up-to-date? If you're familiar with [Docker](https://www.docker.com), I've published a [PhyloCSF Dockerfile](https://gist.github.com/mlin/31c0a7623f99d3bf3222). I hope this is...

It would help to require that a checkpoint record must not follow any other record whose END >= checkpointPOS (on the same contig)

iitii is sensitive ("adaptive", if I'm spinning it) to the data; it's easy to come up with scenarios that revert it to cgranges equivalence. Though those may be rare in...

Specifically on van Emde Boas indexing, given the overall tree geometry, can one figure in constant time, the array index of the *i*'th node (from the left) on tree level...