Mike Lin

This turns out to be tricky to do in a way that won't be incompatible with a future multi-node design: * as the scratch directory isn't shared, we can't manipulate...

@jdidion is this on macOS? Adjusting this setting may help if so https://github.com/chanzuckerberg/miniwdl/issues/145#issuecomment-733435644 -- I am still looking into it

@jdidion In this direct comment link https://github.com/chanzuckerberg/miniwdl/issues/145#issuecomment-733435644 @tomkinsc reported that disabling this obscure Docker for Mac setting "Use gRPC FUSE for file sharing" improved things for him (though it may...

I can confirm that disabling this setting, **Docker for Mac > Preferences > Experimental Features > Use gRPC for file sharing** makes the miniwdl unit test suite work well on...

Bye-the-bye, it would be great if the API allowed the server to optionally send the client multiple page tokens at once, which the client could then opt to retrieve in...

I can strongly recommend looking at the recent work of the [ENCODE Data Coordination Center](https://github.com/encode-dcc) for a _tour de force_ on this topic. Example: https://www.encodeproject.org/experiments/ENCSR897KTO/ . Notice, it documents both...

@dglazer re: ENCODE, their JSON schemas are [here](https://github.com/ENCODE-DCC/encoded/tree/master/src/encoded/schemas). I am cautious about the "parent" concept - I personally would not say a readgroupset is a "parent" of variant calls derived...

@dglazer Indeed my reservations about "parent" are largely terminological. I see one second-order distinction among these suggestions. Calling the relationship "input" and "output" seems to demand some sort of model...

Here are a few illustrations of provenance tracking in DNAnexus presented for informational purposes. This is the BAM file for my genome. Let me click Info to see where it...

Hi all, I was motivated to come back here after another collaborator just run aground on the [htslib int overflow](https://github.com/samtools/htslib/pull/820) when it tries to allocate a 2GB+ PL vector :smile:...