PhyloCSF
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The installation process is extremely painful ended in failure.
Hi I want get a accurate data set of LncRNA by using PhyloCSF, however, I encountered too many problems when I installed this software. according to the instruction, firstly, I planed to install opam, but the linux system haven't higher version of glibc, after I installed glibc-2.17, I can run opam, but I receive a message from opam: "[ERROR] Missing dependencies -- the following commands are required for opam to operate:
- bwrap: Sandboxing tool bwrap was not found. You should install 'bubblewrap'" ;
All right, I turned to download and install bubblewrap, but I encountered many problems when I install "bubblewrap", I downloaded "bubblewrap-0.3.3", but in the release I can't found "configure"file, then I found the version of "0.3.1" release have "configure" file, so I download "bubblewrap-0.3.1" and build it , when I completed "configure" process, I ran the "autogen.sh", But once again, I have a received an error again:
../bubblewrap-0.3.1/configure: line 6213: syntax error near unexpected token WARN_CFLAGS,' ../bubblewrap-0.3.1/configure: line 6213:
CC_CHECK_FLAGS_APPEND(WARN_CFLAGS, CFLAGS, '
I almost collapsed. Is it so difficult to use a software? Now, I urgently hope that any expert can help me.
What distribution do you use? opam
is packaged in many Linux distributions and available on brew
, so you shouldn't need to do the install by hand. If for some reason you have to, you don't absolutely need bubblewrap
: you can just install opam
and add the option --disable-sandboxing
when you call opam init
.