mldmort

Question about the SV pipeline

1

Hi Philipp, I have a question about this pipeline. In the `bed_from_bam` rule you use `bamref2bed`, which I assume generates a bed file from the mapped bam file. Then you...

Issue with sample names

7

Hi, I'm running SequelTools for 8 CLR samples. I'm giving the sample names with `-u subfiles.txt` option. In the subfiles.txt file I put the address of the bam files. This...

Hi, I encountered problems with SV naming of DUPs (DUP:INT and DUP:TANDEM) when I wanted to merge output VCF files from SVIM with a merging software (Jasmine). Having a semi...