telescope
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mlbendall
Quantification of transposable element expression using RNA-seq
Hi, Thanks for developing this useful tool! I got two questions about using telescope: 1. How to prepare a reference GTF for mm10? [telescope_annotation_db](https://github.com/mlbendall/telescope_annotation_db/tree/master/refs) does not include a TE reference...
fix issue #15 ``` File "/app/software/Telescope/1.0.3-20230222-gfbf-2022b/lib/python3.10/site-packages/telescope/utils/model.py", line 255, in _load_sequential _minAS = min(_minAS, *_scores) TypeError: 'int' object is not iterable ```
I tried to run telescope assign on one of my alignment files and get the following lines: Traceback (most recent call last): File "/users/PAS1143/osu8165/.conda/envs/telescope_env/bin/telescope", line 11, in load_entry_point('telescope-ngs==1.0.3', 'console_scripts', 'telescope')()...
Hello, I was able to install telescope and wanted to run telescope test and got below error message: (from print_summary in model.py:537) Traceback (most recent call last): File "/Users/opt/miniconda2/envs/telescope/bin/telescope", line...
Could you please create a new release for your project? To promote reproducible science, could you please use git tags. We require tagged releases when building scientific software. Pulling from...
Hi I have been trying to install the latest version of telescope to my high performance computing cluster but the installation keeps failing. When I try to install it via...
Hi there, I just wanted to join the ranks of others having issues with the current github build. My code/error is below. I have had Telescope installed in the past,...
I have been receiving the following error, and I don't seem to be able to find a solution for it on macOS. Any help and guidance will be very much...
Hello @mlbendall! I'm trying to run Telescope assign but I get this error. I sorted the bam file based on name and also I tried samtools collate. They both give...
