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Other samples of volume data

Open fmatulic opened this issue 3 years ago • 3 comments

Hi, great package. Thanks for sharing it.

I was wondering if you could either include or point to some more samples and datasets on the web that can be opened out of the box with your tool.

Cheers

fmatulic avatar Jun 04 '21 12:06 fmatulic

Hi, and thanks a lot!

For DICOM, I have used this archive for testing: https://imaging.nci.nih.gov/nbia-search-cover/ They have a lot of DICOM datasets. Not all of them are 3D scans though. For the other formats I have come over some dataset collections in past, but I don't remember which ones..

But it would probably be good to make a collection of test datasets that can be used, and put it in a Wiki page on this repository! So I will keep this task open for now :) But the NBIA collection is great for DICOM at least.

mlavik1 avatar Jun 04 '21 20:06 mlavik1

That database is a bit overwhelming and requires a special tool to download the images.

I tried some files on this site, but I couldn't open any with your Dicom importer: https://www.aliza-dicom-viewer.com/download/datasets I'm not familiar with the Dicom format, so not sure what and where I should look for to get proper files that can be imported with your software.

fmatulic avatar Jun 07 '21 09:06 fmatulic

Thanks a lot for that link! I will take a look at the models and investigate why they fail. This week is quite busy, but maybe I can find some time on sunday or next week :)

mlavik1 avatar Jun 16 '21 10:06 mlavik1

Closing this now, since the new SimpleITK integration adds support for DICOM2000 datasets, and in general all DICOM datasets that SimpleITK can import.

mlavik1 avatar Jan 07 '23 21:01 mlavik1