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                                            ming1211

incomplete bed output file generated from Chromap with Chip-seq data

the fourth column of the bed output is null, is it normal? > chr1 0 76 NB501040:284:HW72FBGXG:2:13204:16534:7425 1 - 76M > chr1 9 85 NB501040:284:HW72FBGXG:4:23506:22244:13876 1 - 76M > chr1...

incomplete bed output file generated from Chromap with Chip-seq data

Oh i see, that’s why the output is much smaller than other softwares’. So brilliant!! But after getting this bed output. What i’m trying to do is to use bedToBam...

incomplete bed output file generated from Chromap with Chip-seq data

@haowenz @mourisl Dear Haowen and Song, > An error as below occurred after I add --SAM. Do you know what's the mistake? > chromap: src/temp_mapping.h:42: void ::TempMappingFileHandle::InitializeTempMappingLoading(uint32_t) [with MappingRecord =...

compared with Bowtie2.

@haowenz Thanks for your rapid reply even though it's still the New year holiday. You are right that it is single-end bulk ATAC-seq data. the length of raw reads is...