TxGNN
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Problems when running the cardiovascular split
Hi,
When I try to run the cardiovascular split I encounter the following problems:
-
The object
TxData
downloadsnode.csv
and notnodes.csv
https://github.com/mims-harvard/TxGNN/blob/1000aac7120e0022af09a3ef93dba219e16a094b/txgnn/TxData.py#L25 -
When the object
DataSplitter
calls functionload_kg
and loadsnodes.csv
thesep='\t'
is missing https://github.com/mims-harvard/TxGNN/blob/1000aac7120e0022af09a3ef93dba219e16a094b/txgnn/data_splits/datasplit.py#L20 -
When doing this merge, there is the problem that
kg.csv
has not columnsx_index, y_index
are they the same asx_id
andy_id
? https://github.com/mims-harvard/TxGNN/blob/1000aac7120e0022af09a3ef93dba219e16a094b/txgnn/data_splits/datasplit.py#L92
Thanks!