TDC

TDC copied to clipboard

https://github.com/mims-harvard/TDC/tree/geneformer_server

amva13

Explore embeddings storage perteval <> tdc

1

@cmvcordova

amva13

Hey ya'll! Thanks for the great library! We're taking a look at our dependency licenses and noticed that PyTDC uses the `fuzzywuzzy` library which as a non-permissive copy-left GPL license...

cabreraalex

**Describe the problem** Adding OnSides dataset **Describe the solution you'd like** We propose 2 files as discussed via email. 1 file with a row per each ingredient and label. 1...

joseacitores

Error happened with load data

5

**Describe the bug** The bug was happened while loading the data **To Reproduce** Steps to reproduce the behavior: from tdc.single_pred import Yields data = Yields(name = 'Buchwald-Hartwig') split = data.get_split()...

StefanIsSmart

**Describe the bug** The `PPBR_AZ` dataset returns a different number of molecules depending whether it is loaded via the `admet_group` benchmark or the `ADME` module. Additionally, the data loaded through...

Thematiq

move tests out of the package and use native `pytest` CLI

11

#### Summary This PR refactors our test execution strategy by: - Moving test files out of the main package directory. - Running tests directly via the `pytest` CLI instead of...

Borda

can't use jnk3 and gsk3b models to call oracle functions

3

**Describe the bug** now i'm using these model to get the ocacle scores. but i found that the size of current version model is 675B, it seems impossible to store...

HEU2021201622

bump: relax `cellxgene-census` requirements

3

resolves #367 cc: @amva13

Borda

install this package for testing

4

### Description This PR removes the additional Conda environment file that was previously used for CI setup. Instead, the CI now installs the package directly, relying on its declared dependencies....

Borda