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millanek
The sample is in the VCF but not assigned in the SETS.txt
Hi! I can't understand. I have file like this. Why Dsuite can't find sample. SAmple is in same directory as SETS.txt file 1k.sort.bam tanaicus 5k.sort.bam tanaicus 3k.sort.bam tanaicus SRR10012547.sort.bam europaeus SRR17908653.sort.bam europaeus SRR12518920.sort.bam europaeus SRR17908654.sort.bam europaeus SRR10011655.sort.bam europaeus SRR6485265.sort.bam americanus SRR11020211.sort.bam americanus .. /mss_users/ltursunova/cow/new2/och.fasta Outgroup
Error
Did not find the sample: "mss_users/ltursunova/cow/new2/och.fasta"
1k,5k,SRR10012547,SRR11020211,SRR17044867,SRR17908655,SRR5949621,SRR5949630,SRR6485240,SRR6485284,3k,SRR10082089,SRR11020300,SRR17908653,SRR5949623,SRR5949632,SRR10011655,SRR10082097,SRR12518920,SRR17908654,SRR17908659,SRR5949624,SRR5949634,SRR6485281
Did not find any samples in the VCF for "Outgroup"
Dsuite: Dsuite_common.cpp:28: void SetInformation::linkSetsAndVCFpositions(const std::vector<std::__cxx11::basic_string
I have the same problem. Have you solved it?
Yes, there is two mistake. Outgroup also must be in .bam file, not .fasta. And I don't have to write .sort.bam. For list number and group is enough.
1k tanaicus 5k tanaicus
But I don't have either of those mistakes. It still can't find a sample. Do you know how to solve it?
But I don't have either of those mistakes. It still can't find a sample. Do you know how to solve it?
Do you have this sample at all(MDe2A)? Cheсk your data
Thank you! YES,You can see it in the sample list below。(I use the module Dquartets).
Thank you! YES,You can see it in the sample list below。(I use the module Dquartets).
May be MDe2A appears twice in sets. There's nothing more I can help
Thank you! YES,You can see it in the sample list below。(I use the module Dquartets).
May be MDe2A appears twice in sets. There's nothing more I can help
I seem to have found the problem. In my SETS.txt file, there are Spaces after the sample ID.