Using MiXCR to reconstruct clonotype information from 10X Single Cell Immune Profiling data

[xiaobai-95]

Hi,

I am trying to reconstruct clonotype information from a 10X Genomics Single Cell Immune Profiling data (with dedicated V(D)J amplification). I check the R1 fastq data of Single Cell Immune Profiling data and found it quite different form the R1 fastq data of Single Cell Gene Expression data. I was wondering whether this pipeline also appropriate for my task? Does this require a different srtting of tag-pattern?

Thank you for considering my questions. Kind regards