Ambiguity between query/target in docs

[mikessh]

Read sequence is called targetSequences in the output. While in the mutation format description in docs we have

" Mutations are encoded as a list of single-nucleotide edits (similar to what is used in definition of Levenshtein distance, i.e. insertions, deletions or substitutions); if one apply these mutations to aligned subsequence of target sequence, one will obtain aligned subsequence of query sequence. "

so here the target is actually the germline sequence and query is the read sequence. Consider renaming targetSequences -> querySequences in the output table?

[dbolotin]

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