mixcr
mixcr copied to clipboard
Published
20 hours ago •
milaboratory
milaboratory
Optimize affine aligner scoring
Example:
»> Clone id: 1439
»> Abundance, reads (fraction): 1 (1.0621348911311737E-4)
FR1><CDR1 CDR1><FR2
Quality 74878878888858778878787878877686877878788777886787886786768686677668778776887777
Target0 0 GAGACTTGGTCCAGCCTGGAGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTAGTAGGTTTTTTATGAAC 79 Score (hit score)
IGHV3-7*00 182 gagGcttggtccagcctggGgggtccctgagactctcctgtgcagcctctggattcacctttagtagCtAttGGatgaGc 261 1885 (2517)
FR2><CDR2 CDR2><FR3
Quality 678867787888864777887887876768668678777766887878866787887776877866778868 6768887
Target0 80 TGGGTCCGCCAGGCTCCAGGGAAAGGACTGGAGTGGGTGGCCAACATAAGGCCAGATGGCAGTGGAGAAATA-TATATGG 158 Score (hit score)
IGHV3-7*00 262 tgggtccgccaggctccagggaaGggGctggagtgggtggccaacataaAgcAagatggAagtg-agaaataCtatGtgg 340 1885 (2517)
Quality 67888867886678888888877788888877786887888887778888888878888887888777888768787788
Target0 159 ACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACACCAAGAATTCGCTATTTTTACTAATGAACAGCCTGAGAGCC 238 Score (hit score)
IGHV3-7*00 341 actctgtgaagggccgattcaccatctccagagacaacGccaagaaCtcActGtAtCtGcAaatgaacagcctgagagcc 420 1885 (2517)
FR3><CDR3 V> <D D><J
Quality 888887788888888888887888888788887787888888788888888887888
Target0 239 GACGACACGGCCGTCTATTATTGTGCGAGAGGAGAATCCAGTGCTTTTGATATGTGG 295 Score (hit score)
IGHV3-7*00 421 gaGgacacggcTgtGtattaCtgtgcgagag 451 1885 (2517)
IGHD1-20*00 5 tccag 9 50 (50)
IGHD1-7*00 5 tccag 9 50 (50)
IGHD5-18*00 14 atcca 18 50 (50)
IGHJ3*00 23 tgcttttgatatCtgg 38 131 (412)
