vdjtools
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mikessh
Java-related error
Failing to run the main vdjtools-1.2.1.jar, getting the following error:
C:\Users\Tom>java -version java version "17.0.2" 2022-01-18 LTS Java(TM) SE Runtime Environment (build 17.0.2+8-LTS-86) Java HotSpot(TM) 64-Bit Server VM (build 17.0.2+8-LTS-86, mixed mode, sharing)
C:\Users\Tom>java -jar C:\VDJtools\vdjtools-1.2.1.jar
java.lang.NoClassDefFoundError: Could not initialize class org.codehaus.groovy.vmplugin.v7.Java7
at org.codehaus.groovy.vmplugin.VMPluginFactory.
My windows info if important:
Edition Windows 10 Home Version 21H2 Installed on 2/12/2021 OS build 19044.1586 Experience Windows Feature Experience Pack 120.2212.4170.0
Thank you for any advice.
Failing to run the main vdjtools-1.2.1.jar, getting the following error:
C:\Users\Tom>java -version java version "17.0.2" 2022-01-18 LTS Java(TM) SE Runtime Environment (build 17.0.2+8-LTS-86) Java HotSpot(TM) 64-Bit Server VM (build 17.0.2+8-LTS-86, mixed mode, sharing)
C:\Users\Tom>java -jar C:\VDJtools\vdjtools-1.2.1.jar java.lang.NoClassDefFoundError: Could not initialize class org.codehaus.groovy.vmplugin.v7.Java7 at org.codehaus.groovy.vmplugin.VMPluginFactory.(VMPluginFactory.java:43) at org.codehaus.groovy.reflection.GroovyClassValueFactory.(GroovyClassValueFactory.java:35) at org.codehaus.groovy.reflection.ClassInfo.(ClassInfo.java:109) at org.codehaus.groovy.reflection.ReflectionCache.getCachedClass(ReflectionCache.java:95) at org.codehaus.groovy.reflection.ReflectionCache.(ReflectionCache.java:39) at org.codehaus.groovy.runtime.metaclass.MetaClassRegistryImpl.registerMethods(MetaClassRegistryImpl.java:207) at org.codehaus.groovy.runtime.metaclass.MetaClassRegistryImpl.(MetaClassRegistryImpl.java:105) at org.codehaus.groovy.runtime.metaclass.MetaClassRegistryImpl.(MetaClassRegistryImpl.java:83) at groovy.lang.GroovySystem.(GroovySystem.java:36) at org.codehaus.groovy.runtime.InvokerHelper.(InvokerHelper.java:86) at java.base/java.lang.Class.forName0(Native Method) at java.base/java.lang.Class.forName(Class.java:467) at org.codehaus.groovy.runtime.callsite.CallSiteArray$1.run(CallSiteArray.java:67) at org.codehaus.groovy.runtime.callsite.CallSiteArray$1.run(CallSiteArray.java:64) at java.base/java.security.AccessController.doPrivileged(AccessController.java:318) at org.codehaus.groovy.runtime.callsite.CallSiteArray.createCallStaticSite(CallSiteArray.java:64) at org.codehaus.groovy.runtime.callsite.CallSiteArray.createCallSite(CallSiteArray.java:161) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:136) at com.antigenomics.vdjtools.VdjTools.main(VdjTools.groovy) Exception in thread "main" java.lang.NoClassDefFoundError: Could not initialize class org.codehaus.groovy.reflection.ReflectionCache at org.codehaus.groovy.runtime.dgmimpl.NumberNumberMetaMethod.(NumberNumberMetaMethod.java:33) at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:499) at java.base/java.lang.reflect.ReflectAccess.newInstance(ReflectAccess.java:128) at java.base/jdk.internal.reflect.ReflectionFactory.newInstance(ReflectionFactory.java:347) at java.base/java.lang.Class.newInstance(Class.java:645) at org.codehaus.groovy.runtime.metaclass.MetaClassRegistryImpl.createMetaMethodFromClass(MetaClassRegistryImpl.java:255) at org.codehaus.groovy.runtime.metaclass.MetaClassRegistryImpl.(MetaClassRegistryImpl.java:108) at org.codehaus.groovy.runtime.metaclass.MetaClassRegistryImpl.(MetaClassRegistryImpl.java:83) at groovy.lang.GroovySystem.(GroovySystem.java:36) at org.codehaus.groovy.runtime.InvokerHelper.(InvokerHelper.java:86) at java.base/java.lang.Class.forName0(Native Method) at java.base/java.lang.Class.forName(Class.java:467) at org.codehaus.groovy.runtime.callsite.CallSiteArray$1.run(CallSiteArray.java:67) at org.codehaus.groovy.runtime.callsite.CallSiteArray$1.run(CallSiteArray.java:64) at java.base/java.security.AccessController.doPrivileged(AccessController.java:318) at org.codehaus.groovy.runtime.callsite.CallSiteArray.createCallStaticSite(CallSiteArray.java:64) at org.codehaus.groovy.runtime.callsite.CallSiteArray.createCallSite(CallSiteArray.java:161) at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:47) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:116) at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:136) at com.antigenomics.vdjtools.VdjTools.main(VdjTools.groovy)
My windows info if important:
Edition Windows 10 Home Version 21H2 Installed on 2/12/2021 OS build 19044.1586 Experience Windows Feature Experience Pack 120.2212.4170.0
Thank you for any advice.
hello, have you resolve the error?
@tom-snir @qiangfan2022 Check version of jdk in your computer. Needs to be 1.8 if your computer has updated jdk to 1.18 uninstall and go to java archives here: https://www.oracle.com/java/technologies/downloads/archive/ Download and install the most recent Java from Java SE 8 (8u211 and later) archive It worked for me :)
Guillem
