Mikhail Shugay

[migmap-1.0.2-SNAPSHOT.jar.zip](https://github.com/mikessh/migmap/files/505294/migmap-1.0.2-SNAPSHOT.jar.zip) Storing SNAPSHOT versions here

- Read ids for clonotype - Read header for by read output

Right now alleles with no Cys residue are dropped. These can still be retained, and marked as "no cdr3", as IgBlast allows such alignments (just make sure that no procedures...

CDR/FR markup, identity %

See discussion in #31

- Paired-end - Multi-chain

to speed up on large datasets which are usually highly redundant e.g. https://github.com/ben-manes/caffeine/wiki/Eviction#size-based