Mikhail Shugay

- Take distance measure values directly from `CalcPairwiseDistances` - Add distance correlation

subj

https://github.com/mikessh/vdjtools-doc/issues/1

Developing parsers for other RepSeq processing software

2

The full software list is available [here](http://omictools.com/rep-seq-c424-p1.html)

PDB data

1

V/J/CDR3 and cognate antigens from crystal structures. > N.B. ``reference.id`` in this chuck will point to corresponding publication. If a crystal structure is unpublished, the reference will point to this...

[Kloverpris et al. Programmed death-1 expression on HIV-1-specific CD8+ T cells is shaped by epitope specificity, T-cell receptor clonotype usage and antigen load. AIDS 2014](https://doi.org/10.1097/qad.0000000000000362)

[Watkin et al. Unique influenza A cross-reactive memory CD8 T-cell receptor repertoire has a potential to protect against EBV seroconversion. J Allergy Clin Immunol 2017](https://dx.doi.org/10.1016%2Fj.jaci.2017.05.037)

Multifactorial heterogeneity of virus-specific T cells and association with the progression of human chronic hepatitis B infection

1

https://www.science.org/doi/pdf/10.1126/sciimmunol.aau6905

Various papers with tumor-associated antigens

5

PMID:32518267 PMID:30714987 PMID:27959684 PMID:26901407 PMID:29720506 PMID:29720507 PMID:29720508 PMID:29541393 PMID:27198675 Prepared by Goncharov

Data from http://biorxiv.org/content/early/2021/09/11/2021.09.09.459584 Reference will be updated upon publication [samir_fabio_communication_sep10_HCV_antigen_specific_tcr.csv](https://github.com/antigenomics/vdjdb-db/files/7158560/samir_fabio_communication_sep10_HCV_antigen_specific_tcr.csv)