Michael Love

icon indicating a website link http://mikelove.github.io

icon company UNC-Chapel Hill icon location Chapel Hill, NC icon location Genetics & Biostatistics at UNC-Chapel Hill. R/Bioconductor developer

Results 94 comments of Michael Love

Harmonise output format to that of Salmon

Added an issue: https://github.com/thelovelab/tximeta/issues/81 Rob maybe you can throw up 1-2 quantified samples somewhere?

Harmonise output format to that of Salmon

Oh I noticed/remembered there is currently no digest of the reference sequence in these output files. You can use this new cut of tximport and `skipMeta=FALSE` in tximeta to build...

Harmonise output format to that of Salmon

We should definitely adopt the proposal ideas (so the former). We can start to implement the GA4GH digest even. Lets chat this week

Harmonise output format to that of Salmon

And to be clear, latest GitHub of tximport will work with oarfish