Mihail Anton
Mihail Anton
> let's start with the PR from `develop` to `master` This is going to be weird to test and merge _before_ it gets to `master`.
@Hao-Chalmers I think `memote` requires `cobra` to be installed, in which case maybe the `xml` format can be obtained with ``` cobra.io.write_sbml_model ``` Edit: this approach might yield low scores...
@Hao-Chalmers, with the help of an Action runner with Matlab, the model could be exported via Raven in `xml` format including all the annotations, exactly like on `master`, before running...
A workflow to run [memote on a PR has been merged and released](https://github.com/SysBioChalmers/yeast-GEM/blob/main/.github/workflows/memote-run.yml). It shouldn't be too time consuming to adopt this, or other [memote actions](https://github.com/SysBioChalmers/yeast-GEM/blob/main/.github/workflows/), in Human-GEM. However, in...
@CadavidJoseL did any idea crystallize?
Thanks @JonathanRob. In addition to doing that, I was also intending to add the reference used in the Wikipedia page to MAR08430.
Sorry for eagerly marking MAR09927 without looking at the compartments. For the intended reaction MAR08430 I am having a hard time finding support for the diffusion in the cited article...
Instead of following the legacy naming scheme that seems no longer relevant, a more sensible choice would be something that is familiar for the user, intuitive and Matlab compatible such...
I guess a better fix for this would be to programmatically adopt the ChEBI name for all metabolites with an associated ChEBI id?
I'm going to ping @haowang-bioinfo since he was mentioned in the original thread in #283. I suspect also @JonathanRob might have some thoughts on the matter too.