OMA
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microbiome
Exercises
We should have some exercises about all major chapters / functionalities.
List systematically what is missing and create issue/issues.
At least:
- dbRDA exercises will require an update
- calculating beta diversity with altexp?
It would be nice to do the following in preparation for Radboud Summer School:
- [ ] give more detailed steps in subsetting exercise (see for example exercise above, which has nice numbering, instructions and hints to functions). This will be used in tutorial for data manipulation
- [ ] Improve exercise on subsetting by prevalence. For example, subset to the most prevalent taxa (17.3.3) (tip: subsetByPrevalentFeatures). for count assay; how many features remain? for relative abundance assay; how many features remain? This will be given as extra exercise in tutorial for data manipulation
@antagomir could we assign someone to this issue? More ideas will probably follow as I continue writing the tutorials.
Hi @Insaynoah and @AxelDgn could you have a look at this (and coordinate among yourselves)?
Another point that would be useful to improve for the upcoming summer school:
- [ ] Add step-by-step instructions in exercise 9.2 on heatmaps
- [ ] Create an additional exercise on heatmaps where some more advanced heatmap functionality is demonstrated
You can use this tutorial to get some ideas.
