OMA icon indicating copy to clipboard operation
OMA copied to clipboard

Published 20 hours ago • verified publisher icon microbiome

Triplot examples for (db)RDA

Open antagomir opened this issue 1 year ago • 2 comments

RDA plots can indicate both features as well as covariates that influence ordination. Would be good to show examples in OMA, too.

Here some examples: https://stackoverflow.com/questions/32194193/plotting-rda-vegan-in-ggplot

Here some discussion on extracting feature scores: https://github.com/vegandevs/vegan/issues/254

antagomir avatar May 19 '23 13:05 antagomir

The microViz package contains also nice RDA plot examples. The license is GPL-3 though (hence not directly compatible source code).

antagomir avatar Jul 11 '23 21:07 antagomir

Also check #36

antagomir avatar Jul 18 '23 21:07 antagomir

@RiboRings this seems related to https://github.com/microbiome/mia/issues/541

antagomir avatar May 16 '24 07:05 antagomir

@RiboRings is this something we could close?

antagomir avatar Jul 23 '24 20:07 antagomir

Hi! I have no material for this issue right now. If urgent it could be reassigned.

RiboRings avatar Aug 10 '24 08:08 RiboRings

I think we can close this for now but good to have it on record.

antagomir avatar Aug 10 '24 09:08 antagomir