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                                            Mike Yu

[BUG] `--min-alignment-fraction` in anvi-dereplicate-genomes not working as expected

Thanks @ekiefl for the explanation and workaround!

[`to_ndex`] "description" field does not actually upload from ddot into NDEx

I remember fixing this bug a few months ago. I'll take a look and see what happened...

Pre-compiled CLIXO does not work

Thanks for this investigation. I agree with the removal of the -static flag. If you can create a pull request for just your changes to the makefiles, I'll happily accept...

Tulip does not work on python37

I believe the Tulip source code is at https://github.com/Tulip-Dev/tulip. I'm guessing it can be compiled for py37, but I haven't tried yet. Currently the only time that ddot uses Tulip...