Use Exiftool from the command line to write metadata to images

[btpearse]

I'm stuck on the last step of the Batch Processing notebook at the "Use Exiftool from the command line to write metadata to images". When I run the code it doesn't seem to change anything in my tif files.

I found a similar issue here: https://github.com/micasense/imageprocessing/issues/121, but it looks like it never got solved.

I run the following code and get an output of 0

import subprocess

if os.environ.get('exiftoolpath') is not None:
    exiftool_cmd = os.path.normpath(os.environ.get('exiftoolpath'))
else:
    exiftool_cmd = 'exiftool'
        
cmd = '{} -csv="{}" -overwrite_original {}'.format(exiftool_cmd, fullCsvPath, outputPath)
print(cmd)
subprocess.check_call(cmd)

Very new to this stuff so appreciate the help.

[poynting]

I've noticed that sometimes it does that, and I'm not sure what the issue is. Try to copy/paste the command out into a new anaconda command line and see if that works.

[btpearse]

I may need some guidance for how to do that. This is what I tried:

• open the Anaconda prompt
• set the cd and environment to what I was running in jupyter notebook
• start python
• paste the command line in

I imagine there's a better way of doing it because this didn't work for me!

[poynting]

Sure, it's not a line of python, it's just a command (like the jupyter notebook . command). So you can just copy it into the anaconda prompt - nothing else should be required. If that doesn't work, post your command and the output here; maybe there's something going wrong with the command itself.

Here's the example for the Batch Processing notebook running:

c:\exiftool\exiftool.exe -csv="C:\Users\justi\Downloads\RedEdgeImageSet\0000SET\..\stacks\log.csv" -overwrite_original C:\Users\justi\Downloads\RedEdgeImageSet\0000SET\..\stacks

The output is just the number of files found/updated.

[btpearse]

Interesting, I run it and only one of my tifs is updated. I run it again and another tif gets updated. This is my command: C:\exiftool\exiftool.exe -csv="E:\0006SET\stacks\log.csv" -overwrite_original E:\0006SET\stacks

The output is this long list:

[poynting]

That seems to be telling us that there's a disconnect between the files in the directory, and the paths in the log.csv file. If the filenames between the two don't match those messages will show up.

[btpearse]

Ok well at least I have the command running now. I will have to do some troubleshooting to see why my file names aren't matching up. Thanks for your help on this!

[ghentr]

Hi; this is related. I'm also running the batch processing tutorial, and I get a "No such file or directory" error when I try to run the exiftool -csv line from a Jupyter notebook (running on a Mac). After trying for 4 hours to forensically investigate this problem (because I'm new to exif), I have determined that it's a problem with Jupyter and not exiftool: I know this because I just successfully updated the metadata for all 355 tiffs in the "stacks" folder using the terminal.

Does anyone have any idea what's causing this strange behavior in Jupyter?

Thanks!

++++++

FileNotFoundError Traceback (most recent call last) /var/folders/qt/3lb1lh3x7yz_v0g5s0mnj8xr0000gp/T/ipykernel_69228/2051487202.py in 14 cmd = '{} -csv="{}" "{}"'.format(exiftool_cmd, fullCsvPath, outPath) 15 print(cmd) ---> 16 subprocess.check_call(cmd)

~/mambaforge/envs/micasense/lib/python3.7/subprocess.py in check_call(*popenargs, **kwargs) 356 check_call(["ls", "-l"]) 357 """ --> 358 retcode = call(*popenargs, **kwargs) 359 if retcode: 360 cmd = kwargs.get("args")

~/mambaforge/envs/micasense/lib/python3.7/subprocess.py in call(timeout, *popenargs, **kwargs) 337 retcode = call(["ls", "-l"]) 338 """ --> 339 with Popen(*popenargs, **kwargs) as p: 340 try: 341 return p.wait(timeout=timeout)

~/mambaforge/envs/micasense/lib/python3.7/subprocess.py in init(self, args, bufsize, executable, stdin, stdout, stderr, preexec_fn, close_fds, shell, cwd, env, universal_newlines, startupinfo, creationflags, restore_signals, start_new_session, pass_fds, encoding, errors, text) 798 c2pread, c2pwrite, 799 errread, errwrite, --> 800 restore_signals, start_new_session) 801 except: 802 # Cleanup if the child failed starting.

~/mambaforge/envs/micasense/lib/python3.7/subprocess.py in _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, start_new_session) 1549 if errno_num == errno.ENOENT: 1550 err_msg += ': ' + repr(err_filename) -> 1551 raise child_exception_type(errno_num, err_msg, err_filename) 1552 raise child_exception_type(err_msg) 1553

FileNotFoundError: [Errno 2] No such file or directory: 'exiftool -csv="~/RedEdgeImageSet/stacks/log.csv" "~/imageprocessing/RedEdgeImageSet/stacks/"': 'exiftool -csv="~/imageprocessing/RedEdgeImageSet/stacks/log.csv" "~/imageprocessing/RedEdgeImageSet/stacks/" '