run align script after runwsclean (run_selfcal_pipeline)

[botteon]

Hi, I think that it is worth to add a step in run_selfcal_pipeline.py where align-extrationimage-fluxes.py is run after runwsclean.py. Do you (@twshimwell) think that this is doable? The alignment is different for DR2 and non-DR2 targets, ideally the scripts should handle both cases... Then, a log file in the .tar.gz or a column "correction factor" could be added to the reprocessing database so people already know what is the correction factor for their images once the extracted datasets are distributed..

[twshimwell]

Yeh we should try to make it automatically done indeed. Would require the selfcal pipeline script to take a reference catalogue (and maybe any scaling factor that should be applied to it) as input I guess.