Mathieu Guay-Paquet

I think it would be great to have individual help pages for each script, but could this be _in addition_ to some page which lists all of them? The big...

I added a comment about this issue on the dev wiki in [the section on local testing](https://github.com/spinalcordtoolbox/spinalcordtoolbox/wiki/Testing:-Running-the-test-suite#running-unitfunctional-tests), since it means that the test suite fails on the **second** run after...

Looking into this, I noticed some facts about `sct_image -split` which concern me: - It keeps the image as a 3D image with a singleton dimension when splitting along the...

My first thoughts are that: - Indeed it's not every script that should generate a sidecar. (And possibly some scripts produce multiple images, in which case there should be a...

> @mguaypaq I'm not sure I understand that argument. Are you referring to users who write SHELL scripts that consist of a sequence of SCT commands to process their data...

I fixed the description of the output files in the help message for `sct_fmri_moco` to match the new output. The only other script that uses `moco.py` is `sct_dmri_moco`, but that...

Ah, I forgot to update the tests. Sorry!

Bug fixed, tests updated, ready for review again.

Mathematically, and thinking about algorithms that might use these generated values, I think signed values for X and Y (which is the current behaviour) makes the most sense. It sounds...

Great! It sounds like we're converging on a consensus for replacing the two slice-wise averages (in X and Y) with slice-wise mean magnitude (that is, `sqrt(x*x+y*y)`). I'll implement that.