mgroussi

## Expected Behavior Here's the easy-linclust command I run: mmseqs easy-linclust ref.aa.fa.gz mmseq_clusters_50 tmp_dir --cov-mode 1 -c 0.8 --kmer-per-seq 80 --min-seq-id 0.5 In mmseq_clusters_50_rep_seq.fasta, we should expect having unique sequences...

Using parsnp with a draft reference

4

Hi, I'd like to use parsnp with the genbank option on, but my reference is a draft genome. Is this a problem for parsnp or can it handle the situation?...