Max Levine

Ive narrowed down that the bug is related to GRCh vs hg. Contigs seem to be stripped of the `chr` internally which makes them no longer compatible with the header...

@ljdursi it seems the `chr` stripping is from the original code. Is there a specific reason for this or do you think it can be safely removed? @yangyxt the fork...

This issue seems to rise depending on the random seed. For some samples the pipeline will not successfully complete with all random seeds. I used this code to find which...

I have resolved the locale issue: ``` > Sys.getlocale() [1] "LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C" ``` However, I still get the original error: ``` Error in while (dif > eps && iter < maxiter)...