pathomx
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mfitzp
Workflow based scientific analysis built on Python
Currently all dependencies for plugins need to be shipped with Pathomx itself. This limits plugins to using packages that we provide, which shouldn't be the case. We can support custom...
Trying to use the metabohunter plug-in results in an error stating metabohunter does not exists. I'm running the lastest windows installer
Currently it's not possible to install Pathomx on Linux. This is largely due to the fact that most Linux distributions ship PyQt5 for Python3 only. Switching to Python3 is planned...
Currently the graphs in Pathomx are very unconfigurable. Simple things like being able to change scales/etc. and add error bars would be very helpful. The task is to define a...
Download/import data through the Galaxy (a remote batch processing tool) API.
Integration with the Figshare online figure/data sharing platform. This will need quite a bit of back-end integration e.g. for the user to set their Figshare key.
Add options to export figures from all views either to a specific folder, to the source data folder, or other. Figures should be output on calculation completion. Implementing this will...
Some mechanism (specific plots or other) of filtering data visually would be great. The simplest implementation would be the ability to create regions in a scatter plot that are then...
Some long-running calculations would be nice to 'skip' using a local cache of processed data. The cache should hash the inputs (data) and config (settings) for a given tool, which...
A matplotlib driven difference graph is available in the views, but not currently supported as an independent tool. Add a new tool to the basic_graphs plugin to support this. The...