hagfish

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ValueError: cannot convert float NaN to integer

7

I'm trying to run `hagfish_extract` and am getting the following error: ``` [smoss@biolserva pacbio_assembly]$ hagfish_extract pbreads_to_pbasm_blasr.sorted.bam /home/smoss/.local/lib/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /home/smoss/.local/lib/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid...

gawbul

Thank you for developing this tool !! I wonder if it works (or you have tested it) for mammalian size genomes? We ran it for a couple of days (with...

kspham

Document cplot(2) & blockplot

3

Generate documentation for the plots here: https://github.com/mfiers/hagfish/wiki/Plots (as requested by (@alpapan)

mfiers

Allow the visualization of (simple) markers in a plot. (as requested by @alpapan)

mfiers