mesti90
mesti90
It would be useful to be able to install using pip for python3.12
I tried to run snippy with the following genbank file: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/632/635/GCF_008632635.1_ASM863263v1/GCF_008632635.1_ASM863263v1_genomic.gbff.gz However, the pipeline failed for me when snpEff started. My snpEff version is SnpEff 5.2a (build 2023-10-24 14:24) The...
I'd like to understand why kmc gives an empty output for several genomes. The genome I downloaded and tried to analyze was [https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/067/135/GCF_001067135.1_ASM106713v1/GCF_001067135.1_ASM106713v1_genomic.fna.gz](https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/067/135/GCF_001067135.1_ASM106713v1/GCF_001067135.1_ASM106713v1_genomic.fna.gz) (saved as GCF_001067135.1.fna.gz) The following commands were...
I tried to run kmc (version 3.2.2) on fasta files downloaded from the NCBI ftp server. The program gave only the following error message: Error: unknown exception After many hours...
When launching treeshrink 1.3.9, the software died with the following error: Error in density.default(log(x), adjust = 1) : need at least 2 points to select a bandwidth automatically Calls: threshold...
Among the dependencies you should mention the R package `rmarkdown`. When trying to run `clermonTyping` without this package this caused an error.
I tried to run spoa for a set of larger sequences (200.000 sequences with length of 4000 bp), and it took more than 12 hours to finish. Is there a...