anvio
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[FEATURE REQUEST] Using external gene clusters for anvi-pan-genome
The need
Let the user use their own gene clusters for anvi-pan-genome.
The solution
A flag for anvi-pan-genome to tell the program to not run diamond/MCL, but use a user-defined list of gene cluster. The final pangenome would have the exact same features with AA alignment, functions, homogeneity layers, etc.
Beneficiaries
I would really like that feature, but I'm sure other people would too :D