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[DISCUSSION] how to export MAG taxonomy based on the votes of gene-level taxonomy for splits

Open qinglong89 opened this issue 2 years ago • 0 comments

Hello anvio team,

In version 7.0, I can only saw the MAG taxonomy from the voted taxonomy of gene-level taxonomy for splits.

Here is the command I used: $anvi-refine -p ./SAMPLES-MERGED/PROFILE.db -c contigs.db -C metabat2 -b METABAT__292 --taxonomic-level t_species --server-only -P 8081

Is there any way that I can automatically output the gene-level based voted taxonomy for each MAG?

Thanks.

Qinglong

qinglong89 avatar Nov 03 '22 19:11 qinglong89