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Co-assembling metagenomic sets

Open pedres opened this issue 2 years ago • 0 comments

Short description of the problem

I am sorry to bother you with this problem but I cannot co-assemble my samples. I am following the TARA tutorial with my samples, but megahit always gives the "number of paired-end files not match" error. My set files is CT21 CT63 EW21 EW63

and my samples are

CT21_A-QUALITY_PASSED_R1.fastq CT21_A-QUALITY_PASSED_R2.fastq CT21_B-QUALITY_PASSED_R1.fastq CT21_B-QUALITY_PASSED_R2.fastq CT21_C-QUALITY_PASSED_R1.fastq CT21_C-QUALITY_PASSED_R2.fastq CT63_A-QUALITY_PASSED_R1.fastq CT63_A-QUALITY_PASSED_R2.fastq CT63_B-QUALITY_PASSED_R1.fastq CT63_B-QUALITY_PASSED_R2.fastq CT63_C-QUALITY_PASSED_R1.fastq CT63_C-QUALITY_PASSED_R2.fastq EW21_A-QUALITY_PASSED_R1.fastq EW21_A-QUALITY_PASSED_R2.fastq EW21_B-QUALITY_PASSED_R1.fastq EW21_B-QUALITY_PASSED_R2.fastq EW21_C-QUALITY_PASSED_R1.fastq EW21_C-QUALITY_PASSED_R2.fastq EW63_A-QUALITY_PASSED_R1.fastq EW63_A-QUALITY_PASSED_R2.fastq EW63_B-QUALITY_PASSED_R1.fastq EW63_B-QUALITY_PASSED_R2.fastq EW63_C-QUALITY_PASSED_R1.fastq EW63_C-QUALITY_PASSED_R2.fastq

It works perfectly, when my set file is CT21_A CT21_B CT21_C CT63_A CT63_B CT63_C EW21_A EW21_B EW21_C EW63_A EW63_B EW63_C

anvi'o version

anvio 7.1

anvi-self-test --version

System info

Working on CESGA a supercomputer from Spain. I installed anvio in a conda environment

pedres avatar Sep 09 '22 07:09 pedres