Maryann E. Martone

Both are used. Assuming that the nlx version should be deprecated: http://uri.neuinfo.org/nif/nifstd/nifext_5090

We have an old class from NIF called Nucleic acid > RNA > mRNA > Neurofilament 150kD mRNA = http://uri.neuinfo.org/nif/nifstd/nlx_mol_090801 It is assigned to a few neuron classes. As it...

http://uri.neuinfo.org/nif/nifstd/nifext_5068 and http://purl.obolibrary.org/obo/PR_000005110 Both are used. Assuming we should deprecate the nifext class and substitute PRO

Two olfactory cells have assertions that they are subclasses of gigantocellular reticular neurons: 'Olfactory bulb (main) granule cell' SubClassOf 'Gigantocellular reticular nucleus intrinsic neuron' 'Olfactory cortex large multipolar cell' SubClassOf...

Vestibular nuclei cells are missing from the CUTs. Please add.

2

Also, I think we should be consistent about putting any spatial qualifiers after the main nucleus. We have a bunch of "medial nucleus X" and I think it should be...

Martinotti cells no longer classify

1

I suspect it is because the -PV and -VIP have been added as necessary and sufficient conditions: Mammalia neocortex (unionOf L2 L3 L5) Martinotti +Sst -PV -VIP +GABA intrinsic neuron....

Why are some genes duplicated in names?

2

CRF +Cck +Cck +Cnr1 +Edn3 +Htr3a +Igf1 +VIP +VIP +Vipr1 +ilxtr:LDCV +Adcy9 +Chrm3 +Cplx2 +Htr2c +Pnoc +Npy1r +Tac2 +Cplx3 +Pde7b +Prok2 +Hs6st3 +Syt10 +Rgs12) +Cck +VIP Cck is mentioned 3...

What are these temporary IDs? And where can I find the compact ID's

4

hasTemporaryId ilxtr-NeuronHuang2017-0-ilxtr-hasExpressionPhenotype-NCBIGene-12308-0-ilxtr-hasExpressionPhenotype-NCBIGene-20604-0-ilxtr-hasInstanceInTaxon-NCBITaxon-10090-0-ilxtr-hasNeurotransmitterPhenotype-CHEBI-16865-0-ilxtr-hasSomaLocatedIn-UBERON-0001950

Organizations in SPARC MIS

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I see organization, nonprofit and institution as classes in the MIS. We don't seem to be using organization. I suggest that we clean this up and conform to what we...

+Cplx3 to ERGL?

1

In Huang there seems to be a translation of +Cplx3 to ERGL. Can you provide the provenance for that? I do not see it showing up as a synonym for...