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Adding TArrow for testing

Open edyoshikun opened this issue 11 months ago • 1 comments

This PR adds the Tarrow package wrapped with lightning. It also contains a DataLoader to get the pair of timepoints from ome-zarr.

edyoshikun avatar Jan 29 '25 22:01 edyoshikun

@edyoshikun I was able to draw a batch and construct the model! I now realize the model encodes temporal changes into a dense representation at each time point. The output tensor has 16 channels for each pixel in the input. In other words, the model "lifts" the image into a higher dimension instead of "compressing" it into an embedding. image

For any meaningful comparison with dynaCLR, we will need a downstream embedding model:

image

mattersoflight avatar Feb 09 '25 19:02 mattersoflight