Issues running advntr genotype

[aob93]

Hi,

After installing the package, I'm having difficulty getting the genotype command to run on some pacbio bam files.

Running the following;

advntr genotype -p -a NA07019_SC034768.bam --update -m vntr_data/hg19_VNTRs.db -o bed --working_directory test/

Produces;

Traceback (most recent call last): File "/opt/miniconda2/bin/advntr", line 11, in sys.exit(main()) File "/opt/miniconda2/lib/python2.7/site-packages/advntr/main.py", line 121, in main genotype(args, genotype_parser) File "/opt/miniconda2/lib/python2.7/site-packages/advntr/advntr_commands.py", line 91, in genotype reference_vntrs = load_unique_vntrs_data() File "/opt/miniconda2/lib/python2.7/site-packages/advntr/models.py", line 125, in load_unique_vntrs_data right_flanking, repeats, scaled_score FROM vntrs''') sqlite3.OperationalError: no such table: vntrs

I'm at a bit of a loss here as to what is the issue. Any help is greatly appreciated.