hi, i installed the latest version of adVNTR (v1.32) using miniconda: conda install -c bioconda advntr, and erverything is well but i cannot add (create) a new .db
ohh! i created a new folder : vntr_data
my code is :
advntr addmodel -r sus.fa -p GGGGTCATG -s 14859 -e 14889 -c chr1
error info:
Traceback (most recent call last):
File "/home/miniconda2/envs/py36/bin/advntr", line 11, in
sys.exit(main())
File "/home/miniconda2/envs/py36/lib/python3.6/site-packages/advntr/main.py", line 138, in main
add_model(args, addmodel_parser)
File "/home/miniconda2/envs/py36/lib/python3.6/site-packages/advntr/advntr_commands.py", line 184, in add_model
create_vntrs_database(settings.TRAINED_MODELS_DB)
File "/home/miniconda2/envs/py36/lib/python3.6/site-packages/advntr/models.py", line 115, in create_vntrs_database
''')
sqlite3.OperationalError: disk I/O error
it will generate a new file (hg19_selected_VNTRs_Illumina.db) under vntr_data, if change the permission to 777 (chmod 777 *)
,another error encounterd:
Traceback (most recent call last):
File "/home/miniconda2/envs/py36/bin/advntr", line 11, in
sys.exit(main())
File "/home/miniconda2/envs/py36/lib/python3.6/site-packages/advntr/main.py", line 138, in main
add_model(args, addmodel_parser)
File "/home/miniconda2/envs/py36/lib/python3.6/site-packages/advntr/advntr_commands.py", line 186, in add_model
vntr_id = get_largest_id_in_database() + 1
File "/home/miniconda2/envs/py36/lib/python3.6/site-packages/advntr/models.py", line 207, in get_largest_id_in_database
cursor.execute('''SELECT MAX(id) FROM vntrs''')
sqlite3.OperationalError: disk I/O error
although,I saw the same question, I didn't get any exact solution。
Thank you in advance