SibeliaZ

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Command terminated by signal 11 (Segmentation Fault)

1

I have been trying to align 798 fasta files but it's showing this error- "_Round 0, 0:17179869184 Pass Filling Filtering Command terminated by signal 11 TwoPaco: 44.78 seconds elapsed, 2280796...

ShoumikSaha

TabError: inconsistent use of tabs and spaces in indentation

1

Hi, it seems the `maf_to_gfa1.py` has some formatting problem, could you please confirm it? ``` File "../SibeliaZ/SibeliaZ-LCB/maf_to_gfa1.py", line 97 pos = [record.start for record in maf] ^ TabError: inconsistent use...

housw

2 problems of sibeliaz in my experiment (Bug or not ?)

22

@iminkin Hi, iminkin , thanks a lot for your amazing tool, it plays a very important role in my research ! However, I got 2 problems when I did the...

liaoherui

Are there a script to make circos plot?

1

After running the command: `sibeliaz -t 10 genome1.fa`, the output as follow: `-rw-rw-r-- 1 shu shu 1.1G Jun 8 18:59 alignment.maf` `drwxr-xr-x 2 shu shu 38M Jun 8 18:59 blocks`...

baizixiansheng

I got the problem about the out put

5

when I ues the doucument called SibeliaZ-1.2.0-Linux I ues the commond follow this ./sibeliaz -t 6 /home/lychee/dissertation/ZKV_99cutoff.fasta however there get some probelms Constructing the graph... Threads = 6 Vertex length...

LLS007

Empty MAF file in output

3

I'm getting just one line in **MAF** file of output - **"maf version=1"** and fasta files in **'blocks'** folder. I'm using a **4GB** ram, is it not enough? Even I...

ShoumikSaha

make install step : ";"

7

Hi When I am running the `make install` step in the installation procedure. I see the following error at 58% ``` [ 58%] Building CXX object TwoPaCo/src/graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o cd ${BUILDDIR}/TwoPaCo/src/graphdump &&...

eylenth

Redundancy and contamination analysis on assembly

2

Hi, I just assembled an allotetraploid plant genome but I suspect it has a couple of issues as the assembly size is ~3 times larger than the estimated. I think...

sivico26

Hi, Thanks for your work on SibeliaZ, it looks quite interesting as a potential component for an alignment pipeline I am building. I do have a question though; I am...

jdwinkler-lanzatech

Hello, Title. When I launch sibeliaz, it runs for one or two minutes, and then my Ubuntu session closes. Here is the command `sibeliaz -t24 AA.fasta B.fasta` Do you have...

ghost