SibeliaZ

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bash: line 11, 12 and 13: No such file or directory

9

Hello, I recently installed sibeliaz in the cluster were im working using conda as it's shown instalation part. But when im trying to align 2 genomes, like the 2 genomes...

pipecedeno

Installation issues

2

Hi, Just dowloaded release 1.2.3 and tried to compile, to eventually support SibeliaZ in the easybuild framework. Yet: `CMake Error at CMakeLists.txt:13 (add_subdirectory): The source directory /dev/shm/SibeliaZ/1.2.3/GCCcore-10.2.0/SibeliaZ-1.2.3/spoa does not contain...

cmeesters

Large genome files

4

Hello, I have two large genome files and would like to use SibeliaZ. I recently read this on a biostars thread "Yes, by SibeliaZ you can get .gfa file out...

elissaralam

This is the error pops out during "make install", I'm not sure what is going on.

dukecomeback

twopaco: error while loading shared libraries: libtbb.so.2: cannot open shared object file: No such file or directory

4

Hi there, I used conda to install the sibeliaz: conda install -c bioconda sibeliaz However, I tried to run the program, I encountered with following error: (base) -bash-4.2$ sibeliaz assembly_mini.fasta...

Karimi-81

time should be conda dependency

5

Hi, Installed sibeliaz from conda on linux centOS system. Attempted to run with test dataset and receive the following output: Constructing the graph... line 131: /usr/bin/time: No such file or...

cjfiscus

Reduce number of files created?

6

Hi, I've noticed that Sibeliaz creates a very large number of small files in the "alignment" folder while running. I saw about 1.7 million files generated for 3 genomes (sizes...

jeremylp2

twopaco: symbol lookup error

2

Hello, I installed SibeliaZ with `conda` on our cluster where I do not have root permissions. Here the output : ``` sibeliaz $genome1 $genome2 Constructing the graph... twopaco: symbol lookup...

tderrien

Inaccurate coordinates in MAF file

2

After running SibeliaZ between two fasta files, I found the coordinate is different from the original fasta file, and the sequence did not match back to the reference or query...

smallfade

Installation issues

8

Hi, First of all, thanks for taking the time to answer these questions and for providing this software. I'm having several issues trying to install SibeliaZ on the cluster. Using...

LeebanY