BiG-SCAPE
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medema-group
Similarity networks of biosynthetic gene clusters
Hello, I used the results obtained from the antismash software as input to a specified folder and got the Network_Annotations_Full.tsv file. Why does the BGC column in the table show...
Fixes a whole bunch of mypy issues. Also adds a mypy configuration so it runs properly
I ran BiG-SCAPE on the following MiBIG clusters: BGC0000187, BGC0000194 through BGC0000198, BGC0000213, BGC0000220, BGC0000247, BGC0000269, BGC0000275, BGC0001851, BGC0002045 which all appear as type II polyketide synthases when searching on...
-added and (re)organized antiSMASH 7 and gutSMASH classes to function.py and bigscape.py -updated classes in style.css and changed style so different classes have different color buttons. (Still trying to figure...
An incorrect number of genomes seems to be captured in the index HTML output. Thus, this affects one of the pie charts that is generated. In one case, when using...
Running BiG-SCAPE but getting an IndexError when adding the '--mix' flag. Below is the submission script used which works fine without the --mix flag but produces the error message below...
Related to #2. In the latest version of scikit-learn: > When fit does not converge, cluster_centers_ becomes an empty array and all training samples will be labelled as -1. In...
If multiple cutoff values are chosen, and if MIBiG BGCs are connected with input regions in the higher-value cutoffs, they will be kept, even if they form separate subnetworks and...
If `singletons` option is selected, the MIBiG singletons are not pruned from the final network file
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Similarity networks of biosynthetic gene clusters