An aborted error about Assertion `top > 0.0' failed.

Open Yung-Chien opened this issue 4 years ago • 0 comments

Hi @mdrasmus , I tried to use arg-sample to generate my smc files, while I got an error like this:

arg-sample: src/argweaver/sample_thread.cpp:444: void argweaver::arghmm_forward_alg(const argweaver::LocalTrees*, const argweaver::ArgModel*, const argweaver::Sequences*, argweaver::ArgHmmMatrixIter*, argweaver::ArgHmmForwardTable*, argweaver::PhaseProbs*, bool, bool, bool): Assertion top > 0.0' failed. pipeline.sh: line 7: 216837 Aborted /data8/home/xx/software/argweaver-master/local/bin/arg-sample -s 00_ref/08_snp.pass.hwe1e2.sites -o 01_sample/08_snp.pass.hwe1e2.argsample -N 24781 -m 2.9e-9 -V 3 --overwrite`

I'm confused about whether my input file is too large or not, it contains 151 samples and 7760 sites of variants, should I split them and rerun the program again?

Thanks in advance, Yung-Chien

Dec 08 '21 08:12 Yung-Chien