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A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.

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Hi, I am looking for SV VAF and would like to confirm which file I should reference. Is it the 'ccube_sv_input.txt' file; with columns 'vaf1 and 'vaf2' ? Thank You

I am looking at the SV VAF output. Do you have a more detailed description on how "vaf1" and "vaf2" were derived?