samplot-ml
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mchowdh200
Hello, The Snakemake pipeline works great most of the time but seems to throw an error only for very small (> 1bp) to up to ~70bp Deletions, such as this...
I was made aware that you can run Samplot-ML on Google Cloud Platform (https://docs.google.com/document/d/1EfrNv6Y5aGDbQ3Je5jBI83owdOveVbmqIP6fuCDmEEw), but from the `workflows/conf/samplot-ml-predict.yaml` config file it looks like only local and S3 storage are supported....
Dear @mchowdh200 , I would like to test your tool to filter SV calls using long-read alignments. As i understood, your model was trained with short-read alignments, correct? Do you...
Hi, Thanks to the authors for developing this method! I was looking for a method for further confirmation of CNV genotypes. I'm using samplot for visual confirmation, which is very...
Dear authors, When I run the example provided by executing samplot-ml: `snakemake -s samplot-ml-predict.smk -j 6 --use-conda --conda-frontend mamba` I get the following: ``` Building DAG of jobs... Your conda...
It looks like there is a typo in your command in Example usage, step 8. The --conda-fronend option should be --conda-frontend.