swalign

swalign copied to clipboard

Hi , I was trying to look at the documentation for this library. However, the website is not properly rendered. Please have a look at it. I am attaching an...

humanlearner

@mbreese Thanks for the implementation! https://github.com/mbreese/swalign/blob/master/swalign/__init__.py#L202 You search for the column with max value in the last row and then reset it to the last column in line 202. At...

mschroed

This change refactors the double for loop typical of dynamic programming to save values across loops preventing unnecessary matrix accesses. In my testing, this improved swalign "align" performance by about...

jackwadden

q_pos and r_pos indexing

2

The outputs from alignment.dump() indicate a 1-indexed position number for the start and end of the matching region of the query and reference sequence. However, the output from alignment.r_pos and...

paulaberry