Matt Bookman

Has the use of a NAT gatework with gcp-variant-transforms been tested? I tried using `--use_public_ips false` from the pipeline runner (after enabling Private Google Access) and ran into the problem...

Note that Google Cloud has just announced "Spot VMs" (in Preview) https://cloud.google.com/compute/docs/instances/spot which do not have the same 24 hour limitation: _Spot VMs provide new features that are not supported...

No, you are correct. IGV.js would still need to be CRAM aware. Will follow-up with Jim to see if he has plans to make revisit https://github.com/igvteam/igv.js/issues/247 or if having server-side...

Thanks. BTW, on https://github.com/igvteam/igv.js/issues/247, Jim has indicated that having server-side is the plan until someone writes a CRAM decoder for JavaScript.

I don't believe there is anyone maintaining the `cwl_runner` example. I think the right thing is to at least mark it as such in the [README](https://github.com/googlegenomics/pipelines-api-examples/blob/master/cwl_runner/README.md) or take it down....

Hi @Gibbsdavidl ! I would recommend that you use [dsub](https://github.com/DataBiosphere/dsub). I think it will provide a better experience than the `gcloud` command-line, including having support for wildcards and recursive inputs...

Hi Paul, Yes, a text file-based approach makes a lot of sense and there will be a progression here of examples and preferred approaches. The pipelines API has just been...

Hi Paul, Sorry, there is no reference server to test with locally. The idea of the pipelines API as it stands is to provide this very simple, but powerful, building...

Thanks for reporting this @ccario83 ! Yes, it looks like `dsub` needs to be updated to pass the `gcsfuse` `--billing-project` flag when the `dsub` `--user-project` flag has been provided. The...

Thanks for the report @KarlKeat. I think that you are correct that there's something permissions related, though I too am not sure quite what it might be. I've tested the...