Michael Baudis
Michael Baudis
@gsfk While I started w/ pointing to PXF it really is different when using the term negation here. So probably `negated` or `absent` is the best choice: One expresses that...
@redmitry Some notes: * `filters[0].id` should be `NCIT:C9335`, not double-prefixed * not sure how the filter logic would work Regarding the flag names: As Gordon pointed out, `excluded` has a...
@redmitry My take here is: * We should _not_ use this option for filters with numeric expressions since we already have other ways to do this here * We should...
@jrambla Yep; Phenopackets' [Resource](https://phenopacket-schema.readthedocs.io/en/latest/resource.html).
@redmitry Well, `resources` and `filteringTerms` are independent lists in the response so I guess at least structurally we're good: ``` properties: resources: type: array description: Ontology resources defined externally to...
@joerivandervelde This is getting very specific - however, it should be covered by [`complexValue`](https://github.com/ga4gh-beacon/beacon-v2/blob/main/models/src/beacon-v2-default-model/common/complexValue.yaml)? And in any case - here we've been following Phenopackets, so proposing changes if necessary upstream...
@mshadbolt Good question. We probably should be more empathic about using VRS - however, this had been a bit of a moving target during late development/approval of Beacon v2, therefore...
@mshadbolt WDYT about moving to a more VRS vocabulary in queries, e.g. `alternateBases` => `sequence`, ditching `referenceBases` and `assemblyId` ... etc.? I'm interested in getting users' opinions (I'm in favour).
@joerivandervelde I agree mostly about NCIT in that respect; we had on initiative from GA4GH Metadata years ago introduced "genotypic sex" in PATO (e.g. PATO:0020002: female genetic sex). Still I...