snakepipes icon indicating copy to clipboard operation
snakepipes copied to clipboard

HiC workflow qc plots

Open katsikora opened this issue 2 years ago • 0 comments

  • [ ] add HiC QC plot
  • [ ] add HiC correlate plot - given sample sheet, run HiC correlate for replicates belonging to one condition
  • [ ] check if HiC explorer version can be safely bumped (note: multiqc issues; restriction site handling)
  • [ ] make the multiQC report include any merged samples
  • [ ] check if it is an option to run HiC with --fromBAM and how to deal with bam extension and sample names then

katsikora avatar May 09 '22 10:05 katsikora