snakepipes
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HiC workflow qc plots
- [ ] add HiC QC plot
- [ ] add HiC correlate plot - given sample sheet, run HiC correlate for replicates belonging to one condition
- [ ] check if HiC explorer version can be safely bumped (note: multiqc issues; restriction site handling)
- [ ] make the multiQC report include any merged samples
- [ ] check if it is an option to run HiC with
--fromBAM
and how to deal with bam extension and sample names then