Conflict with Hi-CExplorer

[karimi81]

I tried to install the HiCAssembler according to the instruction provided by developers, but there is a conflict between the version of hicexplorer (and also cooler) and HiCAssembler. Whereas Hicexplorer uses python 3 to install packages, the HiCAssembler is based on python 2.7. After using python 3 to install HiCAssembler, I faced with these issues: Traceback (most recent call last): File "/home/karimi81/hic-assembler/env_HiCAssembler_p37/bin/assemble", line 11, in import hicassembler.HiCAssembler as HiCAssembler File "/home/karimi81/hic-assembler/env_HiCAssembler_p37/lib/python3.7/site-packages/hicassembler/HiCAssembler.py", line 226 print self.N50 ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print(self.N50)?

I would be appreciated if any one can guide me to find out a way to install the software.

[ostueker]

The setup.py should clearly state that it requires (End of Life) Python 2 and is not compatible with Python 3.

Or even better, the devs could release a version that is actually compatible with a Python version that is still supported. Issue #16 suggests that the branch 2to3 would actually work.

[yuzhenpeng]

Hi, I modified the fill followed #16 . But still some erros. Traceback (most recent call last): File "./HiCAssembler-2to3/bin/assemble", line 11, in <module> import hicassembler.HiCAssembler as HiCAssembler File "/root/data1/yuzhenpeng2021/miniconda3/envs/HiCAssembler/lib/python3.8/site-packages/hicassembler/HiCAssembler.py", line 226 print self.N50 ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print(self.N50)?

[yuzhenpeng]

It seems that import hicexplorer.HiCMatrix as HiCMatrix should be changed to import hicmatrix.HiCMatrix as HiCMatrix. #21